Patterns of endemism in the australian flora and using. Assoc prof shawn laffan school of biological, earth and environmental sciences unsw, sydney. Grant lp0562070 laffan and west and unsw frgp funding to laffan. Biodiverse is a free and open source software tool developed for the spatial analysis of diversity. The format used is rgba red, green, blue with a fourth alpha channel for transparency. Instructed as junior to dan saoul qc in a pending high court civil fraud claim.
Biodiversity is usually measured by examining changes in the number of species across a region to identify areas of particularly high species diversity and endemism. Biodiverse users discussion group for support and announcements for users of the biodiverse spatial analysis software. New measure of biodiversity school of biological, earth. A comparison of network and clustering methods to detect. Laffan software limiteds annual general meeting agm was last held on 28 september 2018 and as per records from ministry of corporate affairs mca, its balance sheet was last filed on 31 march 2018. Biodiverse, a tool for the spatial analysis of biological and related diversity shawn w. As a valued partner and proud supporter of metacpan, stickeryou is happy to offer a 10% discount on all custom stickers, business labels, roll labels, vinyl lettering or custom decals. Publicationslist shawnlaffanbiodiverse wiki github. Diversity, biodiverse, biodiversity, conservation, diversity, evolution, faiths phylogenetic diversity, open source software, phylodiversity, phylogenetic endemism, phylogenetic trees, spatial. Biodiverse nogui, simply copy and paste either of the commands in. Use code metacpan10 at checkout to apply your discount. Oct 29, 2014 biodiverse analysis software wednesday, 29 october 2014.
Biodiverse, a tool for the spatial analysis of biological and related. Every project on github comes with a versioncontrolled wiki to give your documentation the high level of care it deserves. Run module spider biodiverse to find out what environment modules are available for this application. If your gis software does not support onthefly projections then you can project the other data to the same coordinate system as your biodiverse. School of biological, earth and environmental sciences science. A longstanding wishlist item for biodiverse is the ability to decrease the resolution of the cells groups. This experiment type is based on associate professor shawn laffan s biodiverse software which is a free tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic and matrixbased relationships. Once that is done then software that does onthefly projections for display will be able to plot any other data over your biodiverse results. Biodiverse, a tool for the spatial analysis of biological and related diversity. Pan, zoom and other functions are now more standard.
Diarmuid laffan has a broad commercial practice focussing on insurancereinsurance, professional liability, construction, civil fraud and sports law. Biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic and matrix e. A useful example of this is when you run calculations for each node of a cluster tree, thereby using the terminal nodes branches below each branch as the neighbourhood units in. Jun 30, 2010 to cite biodiverse or acknowledge its use, cite this software note as follows, substituting the version of the application that you used for version 0. Construction and finance limited is effective from 22. I cannot get any of the biodiverse versions from your github download page at the moment. Margaret laffan joins talentseer as vice president of business development to accelerate expansion of its artificial intelligence talent ecosystem. Can anyone suggest statistical software for alpha, beta and.
For the zooming you simply click the button and the display zooms in. Ras laffan liquefied natural gas co ltd company profile and. Instructed as junior to david turner qc in an international reinsurance dispute. This will give you the ability to see the effect of the weighting factors used in pe and the other indices listed above. New measure of biodiversity unsw science for society. The pan and zoom functionality in biodiverse has always been pretty simple. Associate professor laffan s team developed the biodiverse software in which the new method has been implemented. Directors of laffan software limited are swapan sarkar, kakali ghosh, sandip kumar singh. Biodiverse analysis software wednesday, 29 october 2014. If your gis software does not support onthefly projections then you can project the other data to the same coordinate system as your biodiverse data. Biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic. Dec 10, 2018 once that is done then software that does onthefly projections for display will be able to plot any other data over your biodiverse results. Can anyone suggest statistical software for alpha, beta and gamma diversity variation between the islands. Company profile page for ras laffan liquefied natural gas co ltd including stock price, company news, press releases, executives, board members, and contact information.
This is done via the basedata menu using the trim to match tree nodes option. Appropriate approval was accorded by roc, guwahati, assam. Jun 30, 2010 biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic and matrix e. Cellular automata ca is an important area of research in giscience, with recent research developing vectorbased models in addition to the traditional raster data formats. Lubarsky, school of biological, earth and environmental sciences, univ. Linked visualisation of data distributions in geographic, taxonomic, phylogenetic and matrix spaces. In version 3 of biodiverse it is possible to export your cluster and region grower analyses to shapefile formats. Contribute to shawnlaffanbiodiverse development by creating an account on github.
Barring any major issues, this will be the final development release before version 3 is released. The four measures species richness, weighted endemism, phylogenetic diversity and weighted phylogenetic endemism were estimated using biodiverse v. Could you please check if something is wrong on there. Laffan sw, 20, sensitivity of the bfast algorithm to modis satellite and vegetation index, in piantadosi j. Biodiverse is a software tool developed to perform these and related.
Professor shawn laffan school of biological, earth and. View margaret laffan s profile on linkedin, the worlds largest professional community. To cite biodiverse or acknowledge its use, cite this publication as follows, substituting the version of the application that you used for version 2. Phylogenetic diversity and species richness are usually correlated. School of biological, earth and environmental science, unsw. An overview of the system is also provided in dan rosauers talk at tdwg2008.
Biodiverse is a system to compute indices of biodiversity. Biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic and matrixbased e. In version 2 of biodiverse you can now export any lists that are stored on a tree to the nexus format. Jun 15, 2016 biodiverse is a system to compute indices of biodiversity. Prevent environmental pollution, reducing waste and recycle. Laffan software limited company, directors and contact. Nov 15, 2017 many of the indices in biodiverse allow users to see what the relative contribution of branches on the tree are to one or more indices. Laffan joined american century investments in 2001 as an investment analyst and was promoted to portfolio manager in 2004. School of biological, earth and environmental science, unsw australia nsw 2052 australia authorised by head, school of bees, unsw provider code. This makes it easier to use the regions in geospatial analyses, for example as conditions in spatial analyses in biodiverse. For example, one can see what the weighted branch lengths are in a phylogenetic endemism analysis, or see what the relative loss of phylogenetic diversity would be if a branch was lost from a sample.
The explosion in georeferenced biological specimen and survey data means there is an increasing need for such tools. The issue with this approach is that you will need to rerun your randomisations, but this is perhaps better in any case to avoid differing numbers of tips across the randomisation iterations. Post provided by shawn laffan and andrew thornhill phylodiversity indices are increasingly used in spatial analyses of biodiversity, driven largely by the increased. Taskbiodiverse task to install biodiverse dependencies. Modelling and simulation society of australia and new zealand, modelling and simulation society of australia and new zealand, adelaide, pp. Post provided by shawn laffan and andrew thornhill phylodiversity indices are increasingly used in spatial analyses of biodiversity, driven largely by the increased availability of phylogenetic trees and the tools to analyse them. Biodiverse, a tool for the spatial analysis of biological and. Jan 22, 2016 were working on a future version of biodiverse which will also rescale the tree as you hover over the cells.
We ran all analyses using the software biodiverse, version 1. A key focus of this research is tool development, most of which is free and open source. Federico laffan is a vice president and portfolio manager for american century investments mr. For example, you might have imported your data at a 50 km resolution but want to see what happens to the analysis results when the data are aggregated to 100 km. Biodiverse version 3 will allow users to export geotiffs of the display colours for spatial outputs that have been displayed in the gui. See the complete profile on linkedin and discover margaret. Margaret laffan joins talentseer as vice president of. Patterns of endemism in the australian flora and using biodiverse to find them shawn laffan.
Margaret laffan vp of business development at talentseer. This dendrogram can then be split at the first n number of branches to produce bioregions. Several software packages for the spatial analysis of biodiversity have been developed in the past 10 years e. Ras laffan liquefied natural gas co ltd company profile. Shawn laffan s research interests are in geocomputation and geospatial data analysis, with application domains spanning biodiversity, terrain analysis, disease modelling and human distributions. In addition, a pearsons correlation coefficient analysis was carried out to assess spatial congruence between patterns of species. Biodiverse, a tool for the spatial analysis of biological. Troubleshooting for canape analyses cluster analysis. Biodiverse, a tool for the spatial analysis of biological and related diversity biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic and matrixbased e. Mar 24, 2020 the final development release in the 2. Shawn laffan, programme and speakers, geocomputation.
Post provided by shawn laffan and andrew thornhill. To cite biodiverse or acknowledge its use, cite this software note as follows, substituting the version of the application that you used for version 0. I can not import shapefiles, not even the sample files that are available in the data folder. Ras laffan free definitions by babylon babylon software. To unsubscribe from this group and stop receiving emails from it, send an email to biodiver. Biodiverse is a tool for the spatial analysis of diversity using indices based on taxonomic, phylogenetic, trait and matrixbased e.